miRBase entry: ami-let-7c-2

Stem-loop ami-let-7c-2

Accession

MI0029645

Description

Alligator mississippiensis ami-let-7c-2 precursor miRNA

Sequence

gggugggggccggggUGAGGUAGUAGGUUGUAUGGUUuagagucacacccccggagauaaCUGUACAGCCUCCUAGCUUUCCccgcgccccccca
.((.(((((((((((.(((.(((.(((((((((((((....(((...((...)).)))))))))))))))).))).))).))))).)))))))).

Structure

g  u      -     U   G   U             uaga   aca  c 
 gg gggggc cgggg GAG UAG AGGUUGUAUGGUU    guc   cc  
 || |||||| ||||| ||| ||| |||||||||||||    |||   || c
 cc cccccg gccCC UUC AUC UCCGACAUGUCaa    uag   gg  
a  -      c     U   G   C             ----   --a  c

Annotation confidence Not enough data

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Genome context

AKHW03006683.1: 238111-238205 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ami-let-7c-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-let-7c-5p

Accession	MIMAT0038005
Description	Alligator mississippiensis ami-let-7c-5p mature miRNA
Sequence	16 - UGAGGUAGUAGGUUGUAUGGUU - 37
Evidence	experimental Illumina [1]

Mature ami-let-7c-2-3p

Accession	MIMAT0038007
Description	Alligator mississippiensis ami-let-7c-2-3p mature miRNA
Sequence	61 - CUGUACAGCCUCCUAGCUUUCC - 82
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196