miRBase entry: ami-let-7a-3

Stem-loop ami-let-7a-3


Accession
MI0029641
Description
Alligator mississippiensis ami-let-7a-3 precursor miRNA


Sequence

uccuuuggggUGAGGUAGUAGGUUGUAUAGUUuuaggguuauacccugccugucagauaaCUAUACAAUCUACUGUCUUUccugaaguggc
.(((((.(((.(((((((((((((((((((((.((((((...))))))..........))))))))))))))))))))).))).))).)).

Structure
u  -   g   U                     ---------u      u 
 cc uuu ggg GAGGUAGUAGGUUGUAUAGUU          uagggu  
 || ||| ||| |||||||||||||||||||||          |||||| a
 gg gaa ucc UUCUGUCAUCUAACAUAUCaa          guccca  
c  u   g   U                     uagacugucc      u 


Annotation confidence Not enough data
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Genome context
AKHW03000678.1: 7946891-7946981 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ami-let-7a-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-let-7a-5p

Accession MIMAT0037999
Description Alligator mississippiensis ami-let-7a-5p mature miRNA
Sequence 11 - UGAGGUAGUAGGUUGUAUAGUU - 32
Evidence experimental
Illumina [1]

Mature ami-let-7a-3p

Accession MIMAT0038000
Description Alligator mississippiensis ami-let-7a-3p mature miRNA
Sequence 61 - CUAUACAAUCUACUGUCUUU - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196