miRBase entry: ami-let-7a-1

Stem-loop ami-let-7a-1

Accession

MI0029639

Description

Alligator mississippiensis ami-let-7a-1 precursor miRNA

Sequence

gugggaUGAGGUAGUAGGUUGUAUAGUUuuagggucauacccacaacugggagauaaCUAUACAAUCUACUGUCUUUccuaaagca
.(((((.(((((((((((((((((((((.....(((...((((....)))).))))))))))))))))))))))))))))).....

Structure

----g     U                     uuagg   aua    c 
     uggga GAGGUAGUAGGUUGUAUAGUU     guc   ccca a
     ||||| |||||||||||||||||||||     |||   ||||  
     auccU UUCUGUCAUCUAACAUAUCaa     uag   gggu a
acgaa     -                     -----   --a    c

Annotation confidence Not enough data

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Genome context

AKHW03004488.1: 7298627-7298712 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ami-let-7a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-let-7a-5p

Accession	MIMAT0037999
Description	Alligator mississippiensis ami-let-7a-5p mature miRNA
Sequence	7 - UGAGGUAGUAGGUUGUAUAGUU - 28
Evidence	experimental Illumina [1]

Mature ami-let-7a-3p

Accession	MIMAT0038000
Description	Alligator mississippiensis ami-let-7a-3p mature miRNA
Sequence	58 - CUAUACAAUCUACUGUCUUU - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196