miRBase entry: cpi-mir-17

Stem-loop cpi-mir-17


Accession
MI0029637
Description
Chrysemys picta cpi-mir-17 precursor miRNA


Sequence

gucagaguaauguCAAAGUGCUUACAGUGCAGGUagugauauaagaaccuaCUGCAGUGAAGGCACUUGUAGCauuauauugacaa
(((((.(((((((..((((((((.((.(((((...((.........))...))))).)).))))))))...))))))).)))))..

Structure
--     a       -CA        A  G     GUa  gau 
  gucag guaaugu   AAGUGCUU CA UGCAG   gu   a
  ||||| |||||||   |||||||| || |||||   ||   u
  caguu uauuaCG   UUCACGGA GU ACGUC   ca   a
aa     a       AUG        A  G     auc  aga 


Annotation confidence Not enough data
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Genome context
KK083096.1: 1397279-1397364 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from cpi-mir-17
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-17-5p

Accession MIMAT0037996
Description Chrysemys picta cpi-miR-17-5p mature miRNA
Sequence 14 - CAAAGUGCUUACAGUGCAGGU - 34
Evidence experimental
Illumina [1]

Mature cpi-miR-17-3p

Accession MIMAT0037997
Description Chrysemys picta cpi-miR-17-3p mature miRNA
Sequence 52 - CUGCAGUGAAGGCACUUGUAGC - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196