miRBase entry: cpi-mir-9594

Stem-loop cpi-mir-9594


Accession
MI0029631
Description
Chrysemys picta cpi-mir-9594 precursor miRNA


Sequence

uuaggccauauccucagACAGUGUAAAUCGGCAUAGCGCuuuuaacuucaguggaUCUGUGCUAAUUUACAUCUGCCGaggaccuggcccau
...(((((..(((((.(.((((((((((.(((((((((((.........))))...))))))).))))))).)))).)))))..)))))...

Structure
uua     ua     a A   -       C       ---    uuu 
   ggcca  uccuc g CAG UGUAAAU GGCAUAG   CGCu   a
   |||||  ||||| | ||| ||||||| |||||||   ||||   a
   ccggu  aggaG C GUC ACAUUUA UCGUGUC   guga   c
uac     cc     C -   U       A       Uag    cuu 


Annotation confidence Not enough data
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Genome context
KK088244.1: 252269-252360 [-]

Database links

Mature cpi-miR-9594-5p

Accession MIMAT0037984
Description Chrysemys picta cpi-miR-9594-5p mature miRNA
Sequence 18 - ACAGUGUAAAUCGGCAUAGCGC - 39
Evidence experimental
Illumina [1]

Mature cpi-miR-9594-3p

Accession MIMAT0037985
Description Chrysemys picta cpi-miR-9594-3p mature miRNA
Sequence 56 - UCUGUGCUAAUUUACAUCUGCCG - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196