miRBase entry: cpi-mir-9593

Stem-loop cpi-mir-9593


Accession
MI0029630
Description
Chrysemys picta cpi-mir-9593 precursor miRNA


Sequence

ucuggccucgguuacgcUGGUGUAAAUCUGGAGUGGAUCcccugacuucaguggCGUCACUCCGCAUUUACAUUGCUgugacugagagcacaac
..(((((((((((((((.(((((((((.((((((((..((.(((....))).))..)))))))).))))))))))).))))))))).)).))..

Structure
uc  -  -         -  U         C        AU  c   a 
  ug gc cucgguuac gc GGUGUAAAU UGGAGUGG  Cc cug c
  || || ||||||||| || ||||||||| ||||||||  || |||  
  ac cg gagucagug CG UUACAUUUA GCCUCACU  gg gac u
ca  a  a         U  -         C        GC  u   u 


Annotation confidence Not enough data
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Genome context
chr8: 6065638-6065731 [-]

Database links

Mature cpi-miR-9593-5p

Accession MIMAT0037982
Description Chrysemys picta cpi-miR-9593-5p mature miRNA
Sequence 18 - UGGUGUAAAUCUGGAGUGGAUC - 39
Evidence experimental
Illumina [1]

Mature cpi-miR-9593-3p

Accession MIMAT0037983
Description Chrysemys picta cpi-miR-9593-3p mature miRNA
Sequence 55 - CGUCACUCCGCAUUUACAUUGCU - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196