miRBase entry: cpi-mir-9590

Stem-loop cpi-mir-9590


Accession
MI0029627
Description
Chrysemys picta cpi-mir-9590 precursor miRNA


Sequence

ugggcugaugugcAGUGGUGCUGAGAACCUGCAGUucccauuaacuuuagugaaauCUGGAGAUGCUCAGCACUUCUGAacaacagaucac
((..(((.(((.(((.(((((((((...((.(((....(((((....)))))....))).))...))))))))).))).))).)))..)).

Structure
-  gg   a   g   U         AAC  G   Uucc     a 
 ug  cug ugu cAG GGUGCUGAG   CU CAG    cauua c
 ||  ||| ||| ||| |||||||||   || |||    |||||  
 ac  gac aca GUC UCACGACUC   GA GUC    gugau u
c  ua   a   A   U         GUA  G   uaaa     u 


Annotation confidence Not enough data
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Genome context
KK082916.1: 1152222-1152312 [-]

Database links

Mature cpi-miR-9590-5p

Accession MIMAT0037976
Description Chrysemys picta cpi-miR-9590-5p mature miRNA
Sequence 14 - AGUGGUGCUGAGAACCUGCAGU - 35
Evidence experimental
Illumina [1]

Mature cpi-miR-9590-3p

Accession MIMAT0037977
Description Chrysemys picta cpi-miR-9590-3p mature miRNA
Sequence 57 - CUGGAGAUGCUCAGCACUUCUGA - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196