miRBase entry: cpi-mir-3618

Stem-loop cpi-mir-3618


Accession
MI0029613
Description
Chrysemys picta cpi-mir-3618 precursor miRNA


Sequence

gaaugcauugugauuuccaauaauugagacagugauucugaaagcUGUCUACAUUAAUGAAAAGAACaauguaguca
((.((((((((..(((.((.((((..(((((((..........)))))))..)))).)).)))..)))))))).)).

Structure
-  a        ga   c  a    ug       gauu 
 ga ugcauugu  uuu ca uaau  agacagu    c
 || ||||||||  ||| || ||||  |||||||     
 cu auguaaCA  AAA GU AUUA  UCUGUcg    u
a  g        AG   A  A    CA       aaag 


Annotation confidence Not enough data
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Genome context
KK082996.1: 3849196-3849272 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-3618
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-3618-3p

Accession MIMAT0037949
Description Chrysemys picta cpi-miR-3618-3p mature miRNA
Sequence 46 - UGUCUACAUUAAUGAAAAGAAC - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196