Stem-loop cpi-mir-2188

Accession

MI0029609

Description

Chrysemys picta cpi-mir-2188 precursor miRNA

Sequence

aauaucaaaccugugggaAAGGUCCAACCUCACAUGUCCUguauguaauaaagggGAUGUAUGUGGUCAGACCUAUcccacaggcccuguauucuu
(((((....(((((((((.(((((..(((.((.(((((((.(.........).))))))).)).)))..))))).)))))))))....)))))...

Structure

---     caaa         A     CA   U  C       g aug 
   aauau    ccuguggga AGGUC  ACC CA AUGUCCU u   u
   |||||    ||||||||| |||||  ||| || ||||||| |   a
   uuaug    ggacacccU UCCAG  UGG GU UGUAGgg a   a
uuc     uccc         A     AC   U  A       g aau 

Annotation confidence Not enough data

Genome context

chr2: 35881772-35881867 [-]

Mature cpi-miR-2188-5p

• Accession: MIMAT0037943
• Description: Chrysemys picta cpi-miR-2188-5p mature miRNA
• Sequence: 19 - AAGGUCCAACCUCACAUGUCCU - 40
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-2188-3p

• Accession: MIMAT0037944
• Description: Chrysemys picta cpi-miR-2188-3p mature miRNA
• Sequence: 56 - GAUGUAUGUGGUCAGACCUAU - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196