miRBase entry: cpi-mir-2184

Stem-loop cpi-mir-2184


Accession
MI0029608
Description
Chrysemys picta cpi-mir-2184 precursor miRNA


Sequence

gcccuuggguuuccccaAACAGUAAGAGUUUAUGUGCGGugagagcuagaaucuGCAUGUGGACUCCUACUGCUCCgggaggcuggaaguacca
....((.((((((((....(((((.((((((((((((((.............)))))))))))))).)))))....)))))))).)).......

Structure
---gccc  g        caAA     A              ugaga 
       uu gguuuccc    CAGUA GAGUUUAUGUGCGG     g
       || ||||||||    ||||| ||||||||||||||     c
       ag ucggaggg    GUCAU CUCAGGUGUACGuc     u
accauga  g        CCUC     C              uaaga 


Annotation confidence Not enough data
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Genome context
KK083788.1: 17035-17128 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cpi-mir-2184
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-2184-5p

Accession MIMAT0037941
Description Chrysemys picta cpi-miR-2184-5p mature miRNA
Sequence 18 - AACAGUAAGAGUUUAUGUGCGG - 39
Evidence experimental
Illumina [1]

Mature cpi-miR-2184-3p

Accession MIMAT0037942
Description Chrysemys picta cpi-miR-2184-3p mature miRNA
Sequence 55 - GCAUGUGGACUCCUACUGCUCC - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196