miRBase entry: cpi-mir-1677h

Stem-loop cpi-mir-1677h


Accession
MI0029602
Description
Chrysemys picta cpi-mir-1677h precursor miRNA


Sequence

ucuggggcucAACUGCUCUCCCAAUUAAGUCAguuggacuuuugauuuugACUAAAUUGGGAGAAGGGUUGAguccucug
...(((((((((((..((((((((((.((((((..............)))))).))))))))))..)))))))))))...

Structure
ucu           GC          A      uuggac 
   ggggcucAACU  UCUCCCAAUU AGUCAg      u
   |||||||||||  |||||||||| ||||||       
   uccugAGUUGG  AGAGGGUUAA UCAguu      u
guc           GA          A      uuaguu 


Annotation confidence Not enough data
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Genome context
chr15: 4640620-4640699 [+]

Database links

Mature cpi-miR-1677h-5p

Accession MIMAT0037932
Description Chrysemys picta cpi-miR-1677h-5p mature miRNA
Sequence 11 - AACUGCUCUCCCAAUUAAGUCA - 32
Evidence experimental
Illumina [1]

Mature cpi-miR-1677h-3p

Accession MIMAT0037933
Description Chrysemys picta cpi-miR-1677h-3p mature miRNA
Sequence 51 - ACUAAAUUGGGAGAAGGGUUGA - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196