miRBase entry: cpi-mir-1677d

Stem-loop cpi-mir-1677d


Accession
MI0029597
Description
Chrysemys picta cpi-mir-1677d precursor miRNA


Sequence

guguuuugugggccUGAUCCAAAGCCCAUUGAAGUCAacugaaguuuuuguacugACUUCAGGUGCUUUGAAUCAaauccccuauucacagu
(((....(.(((..((((.((((((((..((((((((((..........))..)))))))))).)))))).))))...))))....)))...

Structure
---   uuuu u   -cc    C      -  AU        --  ugaa 
   gug    g ggg   UGAU CAAAGC CC  UGAAGUCA  ac    g
   |||    | |||   |||| |||||| ||  ||||||||  ||     
   cac    c ccc   ACUA GUUUCG GG  ACUUCAgu  ug    u
uga   uuau -   uaa    A      U  --        ca  uuuu 


Annotation confidence Not enough data
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Genome context
KK088240.1: 7984835-7984926 [-]

Database links

Mature cpi-miR-1677d-5p

Accession MIMAT0037926
Description Chrysemys picta cpi-miR-1677d-5p mature miRNA
Sequence 15 - UGAUCCAAAGCCCAUUGAAGUCA - 37
Evidence experimental
Illumina [1]

Mature cpi-miR-1677d-3p

Accession MIMAT0037927
Description Chrysemys picta cpi-miR-1677d-3p mature miRNA
Sequence 56 - ACUUCAGGUGCUUUGAAUCA - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196