Stem-loop cpi-mir-1677a

Accession

MI0029594

Description

Chrysemys picta cpi-mir-1677a precursor miRNA

Sequence

gucuggauggggccugauUCAGAUCCCAUUGAAGUCAAUGagaauauuucauuugagcuaCUGACUUCAGUGGGCUUUGGUUcagacccacagucacu
(.(((..((((..((((.(((((.(((((((((((((((((((...)))))).........))))))))))))).))))).)))).))))))).)...

Structure

--- u   ga    gc    u     U             ---------      a 
   g cug  uggg  cuga UCAGA CCCAUUGAAGUCA         AUGaga  
   | |||  ||||  |||| ||||| |||||||||||||         |||||| u
   c gac  accc  gacU GGUUU GGGUGACUUCAGU         uacuuu  
uca u   --    -a    U     C             Caucgaguu      a 

Annotation confidence Not enough data

Genome context

KK082962.1: 3830066-3830163 [-]

Mature cpi-miR-1677a-5p

• Accession: MIMAT0037920
• Description: Chrysemys picta cpi-miR-1677a-5p mature miRNA
• Sequence: 19 - UCAGAUCCCAUUGAAGUCAAUG - 40
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-1677a-3p

• Accession: MIMAT0037921
• Description: Chrysemys picta cpi-miR-1677a-3p mature miRNA
• Sequence: 61 - CUGACUUCAGUGGGCUUUGGUU - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196