miRBase entry: cpi-mir-1388

Stem-loop cpi-mir-1388


Accession
MI0029589
Description
Chrysemys picta cpi-mir-1388 precursor miRNA


Sequence

gugagggguguuucgAGGACUGUCUAACCUGAGAAUggugaaacaugaaggucaAUCUCAGGUUCGUCAGCCCAUgagacgccuucuccaga
(.(((((((((((((.((.(((.(.(((((((((.(((.............))).))))))))).).))).)).))))))))).)))))...

Structure
--- u    -         A  A   U U         A   ugaaa 
   g gagg gguguuucg GG CUG C AACCUGAGA Ugg     c
   | |||| ||||||||| || ||| | ||||||||| |||     a
   c cucu ccgcagagU CC GAC G UUGGACUCU acu     u
aga -    u         A  C   U C         A   ggaag 


Annotation confidence Not enough data
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Genome context
KK082954.1: 1007712-1007803 [-]

Database links

Mature cpi-miR-1388-5p

Accession MIMAT0037913
Description Chrysemys picta cpi-miR-1388-5p mature miRNA
Sequence 16 - AGGACUGUCUAACCUGAGAAU - 36
Evidence experimental
Illumina [1]

Mature cpi-miR-1388-3p

Accession MIMAT0037914
Description Chrysemys picta cpi-miR-1388-3p mature miRNA
Sequence 55 - AUCUCAGGUUCGUCAGCCCAU - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196