miRBase entry: cpi-mir-599

Stem-loop cpi-mir-599

Accession

MI0029583

Description

Chrysemys picta cpi-mir-599 precursor miRNA

Sequence

auacugucaauaguguguuugauaaccugaugugggacaggaguucuuuucacuGUUGUGUCAGUUUAUCAAACCCuggaagccccugc
((((((....))))))(((((((((.(((((..(.((((((((.....))).))))).)))))).)))))))))...((.....))...

Structure

auacugucaauagugu         c     gu g     -   u 
                guuugauaa cugau  g gacag gag u
                ||||||||| |||||  | ||||| ||| c
                CAAACUAUU GACUG  U UUGuc cuu u
-cguccccgaagguCC         U     -- G     a   u

Annotation confidence Not enough data

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Genome context

KK082925.1: 9554355-9554443 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-599

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-599-3p

Accession	MIMAT0037906
Description	Chrysemys picta cpi-miR-599-3p mature miRNA
Sequence	55 - GUUGUGUCAGUUUAUCAAACCC - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196