miRBase entry: cpi-mir-489

Stem-loop cpi-mir-489


Accession
MI0029578
Description
Chrysemys picta cpi-mir-489 precursor miRNA


Sequence

gugguggcuuggUGGUCGUAUGUAUGACGUCAUUuacuuggacuuuuaggaGUGACAUCAUAUGUACGGCUGCUaaacugcugcaugggac
(((((((.(((((((((((((((((((.((((((..(((((....))))))))))).))))))))))))))))))).))))))).......

Structure
-------       c                   C      ua     a 
       guggugg uuggUGGUCGUAUGUAUGA GUCAUU  cuugg c
       ||||||| ||||||||||||||||||| ||||||  |||||  
       cgucguc aaUCGUCGGCAUGUAUACU CAGUGa  ggauu u
cagggua       a                   A      --     u 


Annotation confidence Not enough data
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Genome context
KK088218.1: 7276665-7276755 [+]

Database links

Mature cpi-miR-489-5p

Accession MIMAT0037897
Description Chrysemys picta cpi-miR-489-5p mature miRNA
Sequence 13 - UGGUCGUAUGUAUGACGUCAUU - 34
Evidence experimental
Illumina [1]

Mature cpi-miR-489-3p

Accession MIMAT0037898
Description Chrysemys picta cpi-miR-489-3p mature miRNA
Sequence 52 - GUGACAUCAUAUGUACGGCUGCU - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196