miRBase entry: cpi-mir-454

Stem-loop cpi-mir-454

Accession

MI0029571

Description

Chrysemys picta cpi-mir-454 precursor miRNA

Sequence

ccuuaaggaagagACCCUAUCAAUAUUGCCUCUGCuuuugugaucaggguagUAGUGCAAUAUUGCUUAUAGGGUCuuuucuuuggagggu
((((((((((((((((((((((((((((((((((((((.(....)))))))).)).)))))))))...)))))))))))))))).))))..

Structure

--    -                ---         -  -       u u 
  ccuu aaggaagagACCCUAU   CAAUAUUGC CU CUGCuuu g g
  |||| ||||||||||||||||   ||||||||| || ||||||| |  
  ggag uuucuuuuCUGGGAUA   GUUAUAACG GA gauggga c a
ug    g                UUC         U  U       - u

Annotation confidence Not enough data

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Genome context

KK082934.1: 2427643-2427733 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cpi-mir-454

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-454-5p

Accession	MIMAT0037885
Description	Chrysemys picta cpi-miR-454-5p mature miRNA
Sequence	14 - ACCCUAUCAAUAUUGCCUCUGC - 35
Evidence	experimental Illumina [1]

Mature cpi-miR-454-3p

Accession	MIMAT0037886
Description	Chrysemys picta cpi-miR-454-3p mature miRNA
Sequence	53 - UAGUGCAAUAUUGCUUAUAGGGUC - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196