miRBase entry: cpi-mir-449d

Stem-loop cpi-mir-449d


Accession
MI0029569
Description
Chrysemys picta cpi-mir-449d precursor miRNA


Sequence

uguguaugugcugauuAGGCAGUGUAUUGUUAGUUAGCuguuguucacauaccagcaacuaaauacgcuuccacauuagcacacgaccuugcau
.((((((((((((((..((.((((((((..(((((.((((.(((....))).))))))))))))))))).))..)))))))))......)))))

Structure
u     ------         uA  C        GU     A    u   u 
 gugua      ugugcugau  GG AGUGUAUU  UAGUU GCug ugu c
 |||||      |||||||||  || ||||||||  ||||| |||| |||  
 uacgu      acacgauua  cc ucgcauaa  aucaa cgac aua a
-     uccagc         ca  u        --     -    c   c 


Annotation confidence Not enough data
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Genome context
KK082967.1: 568138-568231 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from cpi-mir-449d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-449d-5p

Accession MIMAT0037882
Description Chrysemys picta cpi-miR-449d-5p mature miRNA
Sequence 17 - AGGCAGUGUAUUGUUAGUUAGC - 38
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196