miRBase entry: cpi-mir-383

Stem-loop cpi-mir-383


Accession
MI0029563
Description
Chrysemys picta cpi-mir-383 precursor miRNA


Sequence

aagucaccugcuccucAGAUCAGAAGGUGAUUGUGGCUuugaguagauauuaagcagccacagcacugccuggucagaaagagcaaguguacu
.((((((.(((((.((.((((((..((((.((((((((((((.......))))..))))))))))))..)))))).))..))))).))).)))

Structure
a   -   c     -c  A      AA    A        --    gu 
 agu cac ugcuc  uc GAUCAG  GGUG UUGUGGCU  uuga  a
 ||| ||| |||||  || ||||||  |||| ||||||||  ||||  g
 uca gug acgag  ag cugguc  ucac gacaccga  aauu  a
-   u   a     aa  a      cg    -        cg    au 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
KK082926.1: 8873731-8873823 [+]

Database links

Mature cpi-miR-383-5p

Accession MIMAT0037874
Description Chrysemys picta cpi-miR-383-5p mature miRNA
Sequence 17 - AGAUCAGAAGGUGAUUGUGGCU - 38
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196