Stem-loop cpi-mir-338b

Accession

MI0029557

Description

Chrysemys picta cpi-mir-338b precursor miRNA

Sequence

ugcaaauguuuauuucuggcAACACUAUCCUGAUGCUGUCAGAguaugugguaaagcUCCAGCAUCAGUGAUUUUGUUGUuagugguaaauucaa
.......(((((((.(((((((((..((((((((((((...((((.(......).))))))))))))).)))..))))))))).)))))))....

Structure

ugcaaau       u         CU   -         UCA    a gu 
       guuuauu cuggcAACA  AUC CUGAUGCUG   GAgu u  g
       ||||||| |||||||||  ||| |||||||||   |||| |   
       uaaaugg gauUGUUGU  UAG GACUACGAC   CUcg a  g
---aacu       u         UU   U         ---    a au 

Annotation confidence Not enough data

Genome context

KK088234.1: 2127021-2127115 [+]

Mature cpi-miR-338b-5p

• Accession: MIMAT0037866
• Description: Chrysemys picta cpi-miR-338b-5p mature miRNA
• Sequence: 21 - AACACUAUCCUGAUGCUGUCAGA - 43
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-338b-3p

• Accession: MIMAT0037867
• Description: Chrysemys picta cpi-miR-338b-3p mature miRNA
• Sequence: 58 - UCCAGCAUCAGUGAUUUUGUUGU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196