miRBase entry: cpi-mir-302c

Stem-loop cpi-mir-302c


Accession
MI0029554
Description
Chrysemys picta cpi-mir-302c precursor miRNA


Sequence

uuaaaggacccccuuugcuuuaacauggggguaccugcugccuagaaaaagUAAGUGCUUCCAUGUUUCAGUcguggugg
........((.((...(((..(((((((((((((.((((..........)))).)))))))))))))..)))...)).))

Structure
uuaaagga  c  uuu   uu             c    gccu 
        cc cc   gcu  aacauggggguac ugcu    a
        || ||   |||  ||||||||||||| ||||     
        gg gg   UGA  UUGUACCUUCGUG AUga    g
--------  u  ugc   CU             A    aaaa 


Annotation confidence Not enough data
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Genome context
KK082956.1: 5875986-5876065 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from cpi-mir-302c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-302c-3p

Accession MIMAT0037862
Description Chrysemys picta cpi-miR-302c-3p mature miRNA
Sequence 52 - UAAGUGCUUCCAUGUUUCAGU - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196