miRBase entry: cpi-mir-221

Stem-loop cpi-mir-221

Accession

MI0029546

Description

Chrysemys picta cpi-mir-221 precursor miRNA

Sequence

ccagguuuggggcaugaACCUGGCAUACAAUGUAGAAUUcuguguuuguuaagcaacAGCUACAUUGUCUGCUGGGUUUcaagcugccugga
((((((....(((.(((((((((((.(((((((((....((((((((...)))).))))))))))))).))))))).)))).))))))))).

Structure

-      uugg   a    -       U         AAUU    -    g 
 ccaggu    ggc ugaA CCUGGCA ACAAUGUAG    cugu guuu  
 ||||||    ||| |||| ||||||| |||||||||    |||| |||| u
 gguccg    ucg acUU GGGUCGU UGUUACAUC    GAca cgaa  
a      ----   a    U       C         ----    a    u

Annotation confidence Not enough data

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Genome context

KK082977.1: 2887913-2888004 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-221

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-221-5p

Accession	MIMAT0037850
Description	Chrysemys picta cpi-miR-221-5p mature miRNA
Sequence	18 - ACCUGGCAUACAAUGUAGAAUU - 39
Evidence	experimental Illumina [1]

Mature cpi-miR-221-3p

Accession	MIMAT0037851
Description	Chrysemys picta cpi-miR-221-3p mature miRNA
Sequence	58 - AGCUACAUUGUCUGCUGGGUUU - 79
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196