miRBase entry: cpi-mir-212

Stem-loop cpi-mir-212


Accession
MI0029536
Description
Chrysemys picta cpi-mir-212 precursor miRNA


Sequence

gucagcgcgucggcACCUUGGCUCUAGACUGAUUAcugcuaaguagcauuaaagaaacaguaacagucuacagucauggcuacugaagcauga
.(((..((.((((..((.(((((.(((((((.((((((...................))))))))))))).))))).))...)))).)).)))

Structure
g   gc  g    -cA  U     C       A      cuaaguag 
 uca  gc ucgg   CC UGGCU UAGACUG UUAcug        c
 |||  || ||||   || ||||| ||||||| ||||||        a
 agu  cg aguc   gg acuga aucugac aaugac        u
-   -a  a    auc  u     c       -      aaagaaau 


Annotation confidence Not enough data
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Genome context
KK083788.1: 25119-25211 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cpi-mir-212
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-212-5p

Accession MIMAT0037838
Description Chrysemys picta cpi-miR-212-5p mature miRNA
Sequence 15 - ACCUUGGCUCUAGACUGAUUA - 35
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196