miRBase entry: cpi-mir-206

Stem-loop cpi-mir-206


Accession
MI0029533
Description
Chrysemys picta cpi-mir-206 precursor miRNA


Sequence

uucucuuuugagacaACAUGCUUCUUUAUAUCCCCAUaugaauuaugcugcuaUGGAAUGUAAGGAAGUGUGUGGuuucagggagauga
.(((((((.(((((.((((((((((((((((..(((((.............))))).)))))))))))))))).))))))))))))...

Structure
--u       u     a                CC     ugaau 
   ucucuuu gagac ACAUGCUUCUUUAUAU  CCAUa     u
   ||||||| ||||| ||||||||||||||||  |||||     a
   agaggga cuuuG UGUGUGAAGGAAUGUA  GGUau     u
agu       -     G                -A     cgucg 


Annotation confidence Not enough data
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Genome context
KK088210.1: 11554133-11554221 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-206
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-206-5p

Accession MIMAT0037833
Description Chrysemys picta cpi-miR-206-5p mature miRNA
Sequence 16 - ACAUGCUUCUUUAUAUCCCCAU - 37
Evidence experimental
Illumina [1]

Mature cpi-miR-206-3p

Accession MIMAT0037834
Description Chrysemys picta cpi-miR-206-3p mature miRNA
Sequence 54 - UGGAAUGUAAGGAAGUGUGUGG - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196