Stem-loop cpi-mir-205b

Accession

MI0029532

Description

Chrysemys picta cpi-mir-205b precursor miRNA

Sequence

uccauggcuugcuggugCCCUUCAUUCCACCGGAAUCUGUagaggcagaaaccagauuucaguguaaugaagcccaucagacauggaa
((((((.....((((((..(((((((.(((.((((((((.............)))))))).))).)))))))..)))))).)))))).

Structure

-      gcuug      CC       C   C        Uagag 
 uccaug     cuggug  CUUCAUU CAC GGAAUCUG     g
 ||||||     ||||||  ||||||| ||| ||||||||     c
 agguac     gacuac  gaaguaa gug cuuuagac     a
a      ----a      cc       u   a        caaag 

Annotation confidence Not enough data

Genome context

KK082943.1: 585599-585686 [+]

Mature cpi-miR-205b-5p

• Accession: MIMAT0037832
• Description: Chrysemys picta cpi-miR-205b-5p mature miRNA
• Sequence: 18 - CCCUUCAUUCCACCGGAAUCUGU - 40
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196