miRBase entry: cpi-mir-200b

Stem-loop cpi-mir-200b

Accession

MI0029525

Description

Chrysemys picta cpi-mir-200b precursor miRNA

Sequence

acccugggaugccauuacCAUCUUACUGGGCAGCAUUGGAuguuuucuguguuucUAAUACUGCCUGGUAAUGAUGAUuauggugucucgcac
....(((((((((((...(((((((((((((((.((((((.............)))))).))))))))))).))))...)))))))))))...

Structure

accc           uac    -           C      uguuu 
    ugggaugccau   CAUC UUACUGGGCAG AUUGGA     u
    |||||||||||   |||| ||||||||||| ||||||     c
    gcucuguggua   GUAG AAUGGUCCGUC UAAUcu     u
-cac           uUA    U           A      uugug

Annotation confidence Not enough data

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Genome context

chr24: 8884139-8884231 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpi-mir-200b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-200b-5p

Accession	MIMAT0037822
Description	Chrysemys picta cpi-miR-200b-5p mature miRNA
Sequence	19 - CAUCUUACUGGGCAGCAUUGGA - 40
Evidence	experimental Illumina [1]

Mature cpi-miR-200b-3p

Accession	MIMAT0037823
Description	Chrysemys picta cpi-miR-200b-3p mature miRNA
Sequence	56 - UAAUACUGCCUGGUAAUGAUGAU - 78
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196