miRBase entry: cpi-mir-199-1

Stem-loop cpi-mir-199-1


Accession
MI0029521
Description
Chrysemys picta cpi-mir-199-1 precursor miRNA


Sequence

ccagcccagccugCCCAGUGUUCAGACUACCUGuucaggaggcuaucaagguguACAGUAGUCUGCACAUUGGUUAgauuggguuuggu
(((((((((.(((.(((((((.((((((((.(((.((..............)).))))))))))).))))))).))).))))).)))).

Structure
-    -     c   C       U        C   u  ggaggc 
 ccag cccag cug CCAGUGU CAGACUAC UGu ca      u
 |||| ||||| ||| ||||||| |||||||| ||| ||       
 gguu ggguu gAU GGUUACA GUCUGAUG ACA gu      a
u    u     a   U       C        -   u  ggaacu 


Annotation confidence Not enough data
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Genome context
KK083214.1: 569144-569232 [+]

Database links

Mature cpi-miR-199-5p

Accession MIMAT0037818
Description Chrysemys picta cpi-miR-199-5p mature miRNA
Sequence 14 - CCCAGUGUUCAGACUACCUG - 33
Evidence experimental
Illumina [1]

Mature cpi-miR-199-3p

Accession MIMAT0037819
Description Chrysemys picta cpi-miR-199-3p mature miRNA
Sequence 55 - ACAGUAGUCUGCACAUUGGUUA - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196