miRBase entry: cpi-mir-196-2

Stem-loop cpi-mir-196-2


Accession
MI0029519
Description
Chrysemys picta cpi-mir-196-2 precursor miRNA


Sequence

ugcagcugaucugugguuUAGGUAGUUUCAUGUUGUUGGGauuggcuuuuagcUCGGCAACAAGAAACUGCCUUAauuacgucaguuagucu
.(((((((((..((((((.((((((((((.((((((((((.(((.....))))))))))))).)))))))))).))))))))))))).))..

Structure
-u  -       cu      U          A          a   g 
  gc agcugau  gugguu AGGUAGUUUC UGUUGUUGGG uug c
  || |||||||  |||||| |||||||||| |||||||||| ||| u
  ug uugacug  cauuaA UCCGUCAAAG ACAACGGCUc gau u
uc  a       --      U          A          -   u 


Annotation confidence Not enough data
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Genome context
KK083067.1: 1032828-1032919 [-]

Database links

Mature cpi-miR-196-5p

Accession MIMAT0037815
Description Chrysemys picta cpi-miR-196-5p mature miRNA
Sequence 19 - UAGGUAGUUUCAUGUUGUUGGG - 40
Evidence experimental
Illumina [1]

Mature cpi-miR-196-2-3p

Accession MIMAT0037817
Description Chrysemys picta cpi-miR-196-2-3p mature miRNA
Sequence 54 - UCGGCAACAAGAAACUGCCUUA - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196