miRBase entry: cpi-mir-194-2

Stem-loop cpi-mir-194-2


Accession
MI0029517
Description
Chrysemys picta cpi-mir-194-2 precursor miRNA


Sequence

gugaugccuauuggaUGUAACAGCAACUCCAUGUGGAagguuucaucccuuuuCCAGUGGGGCUGCUGUUAUUUuugauaggcugucag
.((((((((((((((.(((((((((.((((((.(((((((......))...))))))))))).))))))))).)))))))))).)))).

Structure
g    -          U         A      G     ---  uu 
 ugau gccuauugga GUAACAGCA CUCCAU UGGAa   gg  u
 |||| |||||||||| ||||||||| |||||| |||||   ||   
 acug cggauaguuU UAUUGUCGU GGGGUG ACCuu   cc  c
g    u          U         C      -     uuc  ua 


Annotation confidence Not enough data
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Genome context
KK088199.1: 6795569-6795657 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-194-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-194-5p

Accession MIMAT0037812
Description Chrysemys picta cpi-miR-194-5p mature miRNA
Sequence 16 - UGUAACAGCAACUCCAUGUGGA - 37
Evidence experimental
Illumina [1]

Mature cpi-miR-194-2-3p

Accession MIMAT0037814
Description Chrysemys picta cpi-miR-194-2-3p mature miRNA
Sequence 54 - CCAGUGGGGCUGCUGUUAUUU - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196