miRBase entry: cpi-mir-192

Stem-loop cpi-mir-192

Accession

MI0029513

Description

Chrysemys picta cpi-mir-192 precursor miRNA

Sequence

agugcacaggacuAUGACCUAUGAAUUGACAGCCaguccuucugccgcgcccuggCUGUCAGUUCUGUAGGGCACAGguauguucaccu
.(((.(((...((.((.(((((((((((((((((((...............)))))))))))))).))))).)).))...))).)))..

Structure

-a   c   gga  A  A     -              uccuuc 
  gug aca   cu UG CCUAU GAAUUGACAGCCag      u
  ||| |||   || || ||||| ||||||||||||||      g
  cac ugu   GA AC GGAUG CUUGACUGUCgguc      c
uc   u   aug  C  G     U              ccgcgc

Annotation confidence Not enough data

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Genome context

KK088199.1: 6796464-6796552 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-192

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-192-5p

Accession	MIMAT0037807
Description	Chrysemys picta cpi-miR-192-5p mature miRNA
Sequence	14 - AUGACCUAUGAAUUGACAGCC - 34
Evidence	experimental Illumina [1]

Mature cpi-miR-192-3p

Accession	MIMAT0037808
Description	Chrysemys picta cpi-miR-192-3p mature miRNA
Sequence	56 - CUGUCAGUUCUGUAGGGCACAG - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196