miRBase entry: cpi-mir-181b-2

Stem-loop cpi-mir-181b-2


Accession
MI0029504
Description
Chrysemys picta cpi-mir-181b-2 precursor miRNA


Sequence

gcaucuaauggcugcaaucAACAUUCAUUGCUGUCGGUGGGUUuuaguuuguaucaaCUCACUGAUCAAUGAAUGCAaacugcggaccagguagcua
((((((...(((((((.....(((((((((..(((((((((((.((.....))..)))))))))))))))))))).....))))).)))))).))..

Structure
--  -    aau  -     aucAA         CU           -u  g 
  gc aucu   gg cugca     CAUUCAUUG  GUCGGUGGGUU  ua u
  || ||||   || |||||     |||||||||  |||||||||||  || u
  cg ugga   cc ggcgu     GUAAGUAAC  UAGUCACUCaa  au u
au  a    ---  a     caaAC         --           cu  g 


Annotation confidence Not enough data
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Genome context
KK083017.1: 724788-724884 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-181b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-181b-5p

Accession MIMAT0037795
Description Chrysemys picta cpi-miR-181b-5p mature miRNA
Sequence 20 - AACAUUCAUUGCUGUCGGUGGGUU - 43
Evidence experimental
Illumina [1]

Mature cpi-miR-181b-3p

Accession MIMAT0037797
Description Chrysemys picta cpi-miR-181b-3p mature miRNA
Sequence 58 - CUCACUGAUCAAUGAAUGCA - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196