miRBase entry: cpi-mir-153-1

Stem-loop cpi-mir-153-1


Accession
MI0029496
Description
Chrysemys picta cpi-mir-153-1 precursor miRNA


Sequence

cagcugccagugCCAUUUUUGUGAUUUGCAGCUaguaaucuggguccagUUGCAUAGUCACAAAAGUGAgcauuggcagccgugccu
..(((((((((((((((((((((((((((((((.(..........).))))))).))))))))))))).))))))))))).......

Structure
-----ca           -             -       a uaau 
       gcugccagugC CAUUUUUGUGAUU UGCAGCU g    c
       ||||||||||| ||||||||||||| ||||||| |     
       cgacgguuacg GUGAAAACACUGA ACGUUga c    u
uccgugc           A             U       c uggg 


Annotation confidence Not enough data
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Genome context
KK082919.1: 338336-338422 [+]

Database links

Mature cpi-miR-153-5p

Accession MIMAT0037787
Description Chrysemys picta cpi-miR-153-5p mature miRNA
Sequence 13 - CCAUUUUUGUGAUUUGCAGCU - 33
Evidence experimental
Illumina [1]

Mature cpi-miR-153-3p

Accession MIMAT0037788
Description Chrysemys picta cpi-miR-153-3p mature miRNA
Sequence 50 - UUGCAUAGUCACAAAAGUGA - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196