miRBase entry: cpi-mir-147

Stem-loop cpi-mir-147


Accession
MI0029492
Description
Chrysemys picta cpi-mir-147 precursor miRNA


Sequence

uacucuaugaaucuagUGGAAUCAUUUCUGCACAAACUCgacuacugaaaucaGUGUGCGGAAAUGCUUCUGCuacauuuuuagggucuc
.((((((.((((.((((((((.(((((((((((..........((((....))))))))))))))).)))))))).)))).))))))...

Structure
--u      u    c        U           AAACUCgacu    a 
   acucua gaau uagUGGAA CAUUUCUGCAC          acug a
   |||||| |||| |||||||| |||||||||||          ||||  
   ugggau uuua auCGUCUU GUAAAGGCGUG          UGac a
cuc      u    c        C           ----------    u 


Annotation confidence Not enough data
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Genome context
KK088241.1: 244538-244627 [+]

Database links

Mature cpi-miR-147-5p

Accession MIMAT0037780
Description Chrysemys picta cpi-miR-147-5p mature miRNA
Sequence 17 - UGGAAUCAUUUCUGCACAAACUC - 39
Evidence experimental
Illumina [1]

Mature cpi-miR-147-3p

Accession MIMAT0037781
Description Chrysemys picta cpi-miR-147-3p mature miRNA
Sequence 54 - GUGUGCGGAAAUGCUUCUGC - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196