Stem-loop cpi-mir-144

Accession

MI0029487

Description

Chrysemys picta cpi-mir-144 precursor miRNA

Sequence

ugggggcucugggcaGGAUAUCAUCGUAUACUGUAAGuuugcuaugagacacUACAGUAUAGAUGAUGUACUAuccugagcuucaccccu
.((((((((.(((.((.((((((((.(((((((((.((((......))))..))))))))))))))))).)).))).))))....)))).

Structure

u    ----    u   c  G        G         -A    gc 
 gggg    gcuc ggg aG AUAUCAUC UAUACUGUA  Guuu  u
 ||||    |||| ||| || |||||||| |||||||||  ||||   
 cccc    cgag ccu UC UGUAGUAG AUAUGACAU  caga  a
u    acuu    u   A  A        -         ca    gu 

Annotation confidence Not enough data

Genome context

KK082936.1: 6573231-6573320 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-144

Mature cpi-miR-144-5p

• Accession: MIMAT0037770
• Description: Chrysemys picta cpi-miR-144-5p mature miRNA
• Sequence: 16 - GGAUAUCAUCGUAUACUGUAAG - 37
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-144-3p

• Accession: MIMAT0037771
• Description: Chrysemys picta cpi-miR-144-3p mature miRNA
• Sequence: 53 - UACAGUAUAGAUGAUGUACUA - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196