Stem-loop cpi-mir-140

Accession

MI0029483

Description

Chrysemys picta cpi-mir-140 precursor miRNA

Sequence

ucucuguguccugcCAGUGGUUUUACCCUAUGGUAGguuacgucaugcuguucUACCACAGGGUAGAACCACGGAcaggauaccgggcgc
.(((.((((((((((.(((((((((((((.(((((((.((.((...)))).))))))).))))))))))))))).)))))))).)))...

Structure

--u   u        -  A             A       u  c  c 
   cuc guguccug cC GUGGUUUUACCCU UGGUAGg ua gu  
   ||| |||||||| || ||||||||||||| ||||||| || || a
   ggg cauaggac GG CACCAAGAUGGGA ACCAUcu gu cg  
cgc   c        A  -             C       u  -  u 

Annotation confidence Not enough data

Genome context

KK088225.1: 1615453-1615542 [-]

Mature cpi-miR-140-5p

• Accession: MIMAT0037764
• Description: Chrysemys picta cpi-miR-140-5p mature miRNA
• Sequence: 15 - CAGUGGUUUUACCCUAUGGUAG - 36
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-140-3p

• Accession: MIMAT0037765
• Description: Chrysemys picta cpi-miR-140-3p mature miRNA
• Sequence: 54 - UACCACAGGGUAGAACCACGGA - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196