Stem-loop cpi-mir-139

Accession

MI0029482

Description

Chrysemys picta cpi-mir-139 precursor miRNA

Sequence

cggagaggccuggcuguauUCUACAGUGCAUGUGUCUCCAGUguuacuaagcaacUGGAGAUGCAGCCCUGUUGGAAUaacagccagagccaauaucu
......((((((((((((((((((((.((.(((((((((((((((....))).)))))))))))))).))).)))))).)))))))).))).......

Structure

-cggaga   -        -      -   U  A            -   a 
       ggc cuggcugu auUCUA CAG GC UGUGUCUCCAGU guu c
       ||| |||||||| |||||| ||| || |||||||||||| |||  
       ccg gaccgaca UAAGGU GUC CG ACGUAGAGGUca cga u
ucuauaa   a        a      U   C  -            a   a 

Annotation confidence Not enough data

Genome context

KK083037.1: 2173880-2173977 [+]

Mature cpi-miR-139-5p

• Accession: MIMAT0037762
• Description: Chrysemys picta cpi-miR-139-5p mature miRNA
• Sequence: 20 - UCUACAGUGCAUGUGUCUCCAGU - 42
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-139-3p

• Accession: MIMAT0037763
• Description: Chrysemys picta cpi-miR-139-3p mature miRNA
• Sequence: 56 - UGGAGAUGCAGCCCUGUUGGAAU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196