miRBase entry: cpi-mir-133b

Stem-loop cpi-mir-133b


Accession
MI0029474
Description
Chrysemys picta cpi-mir-133b precursor miRNA


Sequence

aggggcugcacccugcucuggcuggucaaacggaaccaaguccgucuuccuuggaggUUUGGUCCCCUUCAACCAGCUacagcagugcugaaauc
.......((((..((((.((((((((..((.((.((((((.((.((......)).)))))))).)).))..)))))))).)))))))).......

Structure
aggggcu    cc    c        ca  c  a      u  g  uu 
       gcac  ugcu uggcuggu  aa gg accaag cc uc  c
       ||||  |||| ||||||||  || || |||||| || ||   
       cgug  acga aUCGACCA  UU CC UGGUUU gg gg  c
cuaaagu    --    c        AC  C  C      -  a  uu 


Annotation confidence Not enough data
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Genome context
KK088210.1: 11559703-11559797 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-133b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-133b-3p

Accession MIMAT0037752
Description Chrysemys picta cpi-miR-133b-3p mature miRNA
Sequence 58 - UUUGGUCCCCUUCAACCAGCU - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196