Stem-loop cpi-mir-133a-2

Accession

MI0029473

Description

Chrysemys picta cpi-mir-133a-2 precursor miRNA

Sequence

aggccaaaugcuuugcuaaAGCUGGUAAAAUGGAACCAAAUcaacuguucaauggaUUUGGUCCCCUUCAACCAGCUGUagcugugcauugauc
......(((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))....

Structure

aggcca     uuu    a       AA  U  A        aacug 
      aaugc   gcua AGCUGGU  AA GG ACCAAAUc     u
      |||||   |||| |||||||  || || ||||||||      
      uuacg   cgaU UCGACCA  UU CC UGGUUUag     u
--cuag     ugu    G       AC  C  C        guaac 

Annotation confidence Not enough data

Genome context

KK088178.1: 3474461-3474554 [+]

Mature cpi-miR-133a-5p

• Accession: MIMAT0037750
• Description: Chrysemys picta cpi-miR-133a-5p mature miRNA
• Sequence: 20 - AGCUGGUAAAAUGGAACCAAAU - 41
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-133a-3p

• Accession: MIMAT0037751
• Description: Chrysemys picta cpi-miR-133a-3p mature miRNA
• Sequence: 57 - UUUGGUCCCCUUCAACCAGCUGU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196