miRBase entry: cpi-mir-130d

Stem-loop cpi-mir-130d


Accession
MI0029470
Description
Chrysemys picta cpi-mir-130d precursor miRNA


Sequence

aguggugucuguccagugcccuuuuuauguuguacuacuagugaucauacacaaaaagcAGUGCAAUGUUAAAAGGGCAUUggccagugauacuguc
...((((((((.(((((((((((((.((((((((((.((.(((......)))....)).)))))))))).))))))))))))).))..))))))...

Structure
agu      --  u             u          a  ---a   au 
   gguguc  ug ccagugcccuuuu auguuguacu cu    gug  c
   ||||||  || ||||||||||||| |||||||||| ||    |||   
   ucauag  ac ggUUACGGGAAAA UGUAACGUGA ga    cac  a
cug      ug  c             U          c  aaaa   au 


Annotation confidence Not enough data
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Genome context
KK088184.1: 246998-247094 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-130d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-130d-3p

Accession MIMAT0037747
Description Chrysemys picta cpi-miR-130d-3p mature miRNA
Sequence 60 - AGUGCAAUGUUAAAAGGGCAUU - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196