miRBase entry: cpi-mir-130b

Stem-loop cpi-mir-130b


Accession
MI0029468
Description
Chrysemys picta cpi-mir-130b precursor miRNA


Sequence

caggcaggcugccACUCUUUCCCUGUUGCACUACUguuaaacuuguagcuagCAGUGCAAUAAUGAAAGGGCGUcggucugccag
..(((((((((.(.(((((((..(((((((((.((((((......)))).)).)))))))))..))))))).).)))))))))..

Structure
ca         c A       CC         A  -    aa 
  ggcaggcug c CUCUUUC  UGUUGCACU CU guua  c
  ||||||||| | |||||||  ||||||||| || ||||   
  ccgucuggc G GGGAAAG  AUAACGUGA ga cgau  u
ga         U C       UA         C  u    gu 


Annotation confidence Not enough data
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Genome context
KK082934.1: 2426342-2426426 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from cpi-mir-130b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-130b-5p

Accession MIMAT0037743
Description Chrysemys picta cpi-miR-130b-5p mature miRNA
Sequence 14 - ACUCUUUCCCUGUUGCACUACU - 35
Evidence experimental
Illumina [1]

Mature cpi-miR-130b-3p

Accession MIMAT0037744
Description Chrysemys picta cpi-miR-130b-3p mature miRNA
Sequence 53 - CAGUGCAAUAAUGAAAGGGCGU - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196