Stem-loop cpi-mir-126

Accession

MI0029462

Description

Chrysemys picta cpi-mir-126 precursor miRNA

Sequence

ggcggcgacgcuggugccggccCAUUAUUACUUUUGGUACGCGcugugacacuucaaacUCGUACCGUGAGUAAUAAUGCGcugcggccagcccuggcgac
..((.((..((((((..((((.(((((((((((.(((((((.....(((....)))....))))))).))))))))))).))))..))))))..)).))..

Structure

gg  g  ac      gc    c           U       CGcug   c 
  cg cg  gcuggu  cggc CAUUAUUACUU UGGUACG     uga a
  || ||  ||||||  |||| ||||||||||| |||||||     |||  
  gc gu  cgaccg  gucG GUAAUAAUGAG GCCAUGC     acu c
ca  g  cc      gc    C           U       -Ucaa   u 

Annotation confidence Not enough data

Genome context

KK082942.1: 6838958-6839058 [+]

Mature cpi-miR-126-5p

• Accession: MIMAT0037733
• Description: Chrysemys picta cpi-miR-126-5p mature miRNA
• Sequence: 23 - CAUUAUUACUUUUGGUACGCG - 43
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-126-3p

• Accession: MIMAT0037734
• Description: Chrysemys picta cpi-miR-126-3p mature miRNA
• Sequence: 60 - UCGUACCGUGAGUAAUAAUGCG - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196