miRBase entry: cpi-mir-124-4

Stem-loop cpi-mir-124-4


Accession
MI0029458
Description
Chrysemys picta cpi-mir-124-4 precursor miRNA


Sequence

cgcucggcuuccgcuuuuCGUGUUCACAGCGGACCUUGAuuuaauuucauacaauUAAGGCACGCGGUGAAUGCCAagagagaagccggacu
...((((((((..(((((.((((((((.(((..((((((((...........))))))))..))).)))))))).))))).))))))))...

Structure
cgc        cg     C        A   GA        uaau 
   ucggcuuc  cuuuu GUGUUCAC GCG  CCUUGAuu    u
   ||||||||  ||||| |||||||| |||  ||||||||    u
   ggccgaag  gagaA CGUAAGUG CGC  GGAAUuaa    c
uca        -a     C        G   AC        caua 


Annotation confidence Not enough data
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Genome context
KK082935.1: 897991-898082 [+]

Database links

Mature cpi-miR-124-5p

Accession MIMAT0037726
Description Chrysemys picta cpi-miR-124-5p mature miRNA
Sequence 19 - CGUGUUCACAGCGGACCUUGA - 39
Evidence experimental
Illumina [1]

Mature cpi-miR-124-3p

Accession MIMAT0037727
Description Chrysemys picta cpi-miR-124-3p mature miRNA
Sequence 56 - UAAGGCACGCGGUGAAUGCCA - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196