miRBase entry: cpi-mir-106b

Stem-loop cpi-mir-106b

Accession

MI0029452

Description

Chrysemys picta cpi-mir-106b precursor miRNA

Sequence

ccggcuccgcagggcUAAAGUGCUGACAGUGCAGGUagcuagcgucugguugcuacugcagugugggggcuugcagcucuggggggccacug
..((((((.(((((((.((((.((.(((.(((((((((((((...))))))))..))))).))).)).))))..))))))).))))))....

Structure

--cc      g       -A    G  G   G     --        c 
    ggcucc cagggcU  AAGU CU ACA UGCAG  GUagcuag  
    |||||| |||||||  |||| || ||| |||||  |||||||| g
    ccgggg gucucga  uucg gg ugu acguc  cguugguc  
guca      g       cg    g  g   g     au        u

Annotation confidence Not enough data

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Genome context

KK083587.1: 75831-75922 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-106b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-106b-5p

Accession	MIMAT0037722
Description	Chrysemys picta cpi-miR-106b-5p mature miRNA
Sequence	16 - UAAAGUGCUGACAGUGCAGGU - 36
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196