miRBase entry: cpi-mir-99b

Stem-loop cpi-mir-99b


Accession
MI0029445
Description
Chrysemys picta cpi-mir-99b precursor miRNA


Sequence

cguugccgguugccauaAACCCGUAGAUCCGAACUUGCGguacgacugccucacaCAAGCUCGAGUCUGUGGGUAugugucgauccuggccagg
....((((((((.((((.((((((((((.(((.((((.((((....)))).....)))).))).)))))))))).)))).))).)).)))....

Structure
cguu   -  -   c    A          C   A    ----C    c 
    gcc gg uug caua ACCCGUAGAU CGA CUUG     Ggua g
    ||| || ||| |||| |||||||||| ||| ||||     ||||  
    cgg cc agc gugu UGGGUGUCUG GCU GAAC     ccgu a
ggac   u  u   u    A          A   C    acacu    c 


Annotation confidence Not enough data
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Genome context
KK083354.1: 287396-287489 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cpi-mir-99b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-99b-5p

Accession MIMAT0037712
Description Chrysemys picta cpi-miR-99b-5p mature miRNA
Sequence 18 - AACCCGUAGAUCCGAACUUGCG - 39
Evidence experimental
Illumina [1]

Mature cpi-miR-99b-3p

Accession MIMAT0037713
Description Chrysemys picta cpi-miR-99b-3p mature miRNA
Sequence 56 - CAAGCUCGAGUCUGUGGGUA - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196