miRBase entry: cpi-mir-30c-1

Stem-loop cpi-mir-30c-1


Accession
MI0029426
Description
Chrysemys picta cpi-mir-30c-1 precursor miRNA


Sequence

gccaugcuguagcaugUGUAAACAUCCUACACUCUCAGCUguggacucaagguagCUGGGAGAGGGUUGUUUACUCCuucugccauggacugaa
.(((((..((((...(.(((((((.(((...((((((((((((....))...)))))))))).))).))))))).)...)))))))))......

Structure
-----g     cu    cau U       U   ACA          ---  g 
      ccaug  guag   g GUAAACA CCU   CUCUCAGCUg   ug a
      |||||  ||||   | ||||||| |||   ||||||||||   ||  
      gguac  cguc   C CAUUUGU GGG   GAGGGUCgau   ac c
aaguca     --    uuC U       U   --A          gga  u 


Annotation confidence Not enough data
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Genome context
chr19: 6120342-6120435 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-30c-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-30c-5p

Accession MIMAT0037678
Description Chrysemys picta cpi-miR-30c-5p mature miRNA
Sequence 17 - UGUAAACAUCCUACACUCUCAGCU - 40
Evidence experimental
Illumina [1]

Mature cpi-miR-30c-3p

Accession MIMAT0037679
Description Chrysemys picta cpi-miR-30c-3p mature miRNA
Sequence 56 - CUGGGAGAGGGUUGUUUACUCC - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196