miRBase entry: cpi-mir-30a

Stem-loop cpi-mir-30a


Accession
MI0029424
Description
Chrysemys picta cpi-mir-30a precursor miRNA


Sequence

gcuguugacagugagcgacUGUAAACAUCCUCGACUGGAagcugugaagcagcagauggggCUUUCAGUCGGAUGUUUGCAGCugccaacugccacagacu
.((((.(.((((..(((.((((((((((((..(((((((((((.(............).))))))))))))))))))))))).)))..))))).))))...

Structure
--g    u a    ga   a            UC           g gaagc 
   cugu g cagu  gcg cUGUAAACAUCC  GACUGGAagcu u     a
   |||| | ||||  ||| ||||||||||||  ||||||||||| |      
   gaca c guca  cgu GACGUUUGUAGG  CUGACUUUCgg g     g
uca    c -    ac   C            --           g uagac 


Annotation confidence Not enough data
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Genome context
KK083109.1: 173874-173974 [-]

Database links

Mature cpi-miR-30a-5p

Accession MIMAT0037674
Description Chrysemys picta cpi-miR-30a-5p mature miRNA
Sequence 20 - UGUAAACAUCCUCGACUGGA - 39
Evidence experimental
Illumina [1]

Mature cpi-miR-30a-3p

Accession MIMAT0037675
Description Chrysemys picta cpi-miR-30a-3p mature miRNA
Sequence 62 - CUUUCAGUCGGAUGUUUGCAGC - 83
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196