miRBase entry: cpi-mir-29b-2

Stem-loop cpi-mir-29b-2


Accession
MI0029423
Description
Chrysemys picta cpi-mir-29b-2 precursor miRNA

Literature search
1 open access papers mention cpi-mir-29b-2
(8 sentences)

Sequence

gucuucuucuggaagCUGGUUUCACAUGGUGGCUUAGAUuuucccaucuuuguaucUAGCACCAUUUGAAAUCAGUGuucuaggagcaagaa
.(((((((((((((((((((((((.((((((.((.((((..............)))))))))))).)))))))))).))))))))).)))).

Structure
g    -         -          C      G  U    uuuccc 
 ucuu cuucuggaa gCUGGUUUCA AUGGUG CU AGAU      a
 |||| ||||||||| |||||||||| |||||| || ||||       
 agaa gaggaucuu UGACUAAAGU UACCAC GA Ucua      u
a    c         G          U      -  -    uguuuc 


Annotation confidence Not enough data
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Genome context
chr4: 88729-88820 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-29b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-29b-3p

Accession MIMAT0037672
Description Chrysemys picta cpi-miR-29b-3p mature miRNA
Sequence 57 - UAGCACCAUUUGAAAUCAGUG - 77
Evidence experimental
Illumina [1]

Mature cpi-miR-29b-2-5p

Accession MIMAT0037673
Description Chrysemys picta cpi-miR-29b-2-5p mature miRNA
Sequence 16 - CUGGUUUCACAUGGUGGCUUAGAU - 39
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196