miRBase entry: cpi-mir-27b

Stem-loop cpi-mir-27b

Accession

MI0029419

Description

Chrysemys picta cpi-mir-27b precursor miRNA

Sequence

accucucuaacaaggugcAGAGCUUAGCUGAUUGGUGAACagugauugauuuccucuuugUUCACAGUGGCUAAGUUCUGCaccugaagagaaggugaga
((((((((....(((((((((((((((((.((((.(((((((.((.........)).))))))))))))))))))))))))))))..)))).))))....

Structure

----    -    aaca                 G    G       u  uug 
    accu cucu    aggugcAGAGCUUAGCU AUUG UGAACag ga   a
    |||| ||||    ||||||||||||||||| |||| ||||||| ||   u
    ugga gaga    uccaCGUCUUGAAUCGG UGAC ACUUguu cu   u
agag    a    --ag                 -    -       u  ccu

Annotation confidence Not enough data

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Genome context

KK088213.1: 2615975-2616074 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpi-mir-27b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-27b-5p

Accession	MIMAT0037666
Description	Chrysemys picta cpi-miR-27b-5p mature miRNA
Sequence	19 - AGAGCUUAGCUGAUUGGUGAAC - 40
Evidence	experimental Illumina [1]

Mature cpi-miR-27b-3p

Accession	MIMAT0037667
Description	Chrysemys picta cpi-miR-27b-3p mature miRNA
Sequence	61 - UUCACAGUGGCUAAGUUCUGC - 81
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196