miRBase entry: cpi-mir-27a

Stem-loop cpi-mir-27a


Accession
MI0029418
Description
Chrysemys picta cpi-mir-27a precursor miRNA


Sequence

gauaccggggugcAGGGCUUAGCUCACCUGUGAAcagaguucgcauccguaucgugUUCACAGUGGCUAAGUUCCGCcccccgggguccguu
(((.((((((.((.(((((((((.(((.((((((((..((.((....)).))..)))))))))))))))))))).)).)))))).)))....

Structure
----   a      u  A         U   C        ga  u  c 
    gau ccgggg gc GGGCUUAGC CAC UGUGAAca  gu cg a
    ||| |||||| || ||||||||| ||| ||||||||  || ||  
    cug ggcccc CG CUUGAAUCG GUG ACACUUgu  ua gc u
uugc   g      c  C         -   -        gc  u  c 


Annotation confidence Not enough data
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Genome context
KK088216.1: 354904-354995 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cpi-mir-27a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-27a-5p

Accession MIMAT0037664
Description Chrysemys picta cpi-miR-27a-5p mature miRNA
Sequence 14 - AGGGCUUAGCUCACCUGUGAA - 34
Evidence experimental
Illumina [1]

Mature cpi-miR-27a-3p

Accession MIMAT0037665
Description Chrysemys picta cpi-miR-27a-3p mature miRNA
Sequence 57 - UUCACAGUGGCUAAGUUCCGC - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196