miRBase entry: cpi-mir-18b

Stem-loop cpi-mir-18b


Accession
MI0029403
Description
Chrysemys picta cpi-mir-18b precursor miRNA


Sequence

guuccuuguguUAAGGUGCAUCUAGUGCAGUUAgugaaguagcuuagaaucuACUGCCCUAAAUGCUCCUUCUGGca
......(((...((((.((((.(((.(((((.((................))))))).))).)))).))))...)))

Structure
guuccu   guU    U    C   U     U  ugaagua 
      ugu   AAGG GCAU UAG GCAGU Ag       g
      |||   |||| |||| ||| ||||| ||        
      acG   UUCC CGUA AUC CGUCA uc       c
------   GUC    U    A   C     -  uaagauu 


Annotation confidence Not enough data
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Genome context
KK088187.1: 4591575-4591651 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from cpi-mir-18b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-18b-5p

Accession MIMAT0037640
Description Chrysemys picta cpi-miR-18b-5p mature miRNA
Sequence 12 - UAAGGUGCAUCUAGUGCAGUUA - 33
Evidence experimental
Illumina [1]

Mature cpi-miR-18b-3p

Accession MIMAT0037641
Description Chrysemys picta cpi-miR-18b-3p mature miRNA
Sequence 53 - ACUGCCCUAAAUGCUCCUUCUGG - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196